Yes, the red light is a port/dealer install, however it is a Toyota part and is integrated into the Toyota fob. You can buy the RS3200+ system
RS3200+ Alarm System Help 2003 4Runner, (I did this, and it was easy) and it shares the same light with the immobilizer next to the A/C.
I'm pretty sure all 4th gen T4Rs have immobilizers.
There is one thing to check, that happened to my 3rd gen. The switch on the frame that lets the truck know the door is shut or not had failed so I was having problems arming/disarming the system. It's easy to check, just push it in with the door open and see if the dome lights and open door light on the instrument cluster light up when you release.
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CURRENT: '14 Limited Mag Gray, '17 Limited Mag Gray, '19 Mercedes GLC300, '08 Urban Runner | SOLD: '96 4runner SR5, '08 Urban Runner, '14 Limited Blizzard Pearl