If I am seeing this correct, you have a non-sport hood. Not sure how far the scratches are, but I helped a coworker put one of these on his 2005, while it was a pain in the rear end to line up and get all the bubbles out, the end result was nice. For sake of ease, we did take out the windshield sprayer nozzles.
4Runner Hood Stamp 4th Gen (2003-2009)
– BEYOND WRAPS