After more trouble shooting and searching still no luck.
Its still in the shop (owned by a good family friend). All wires have been traced, and each component has been tested according to the wiring diagram and the batery was used to bypass the iginition switch and the engine did turn over (no fuel pump running for a proper startup as it was tricked to turn over). Seems like there is a problem before the ignition relay however the relay tested good. Alarm system also tested good as well as the park/neutral sensor. All wires look to be in good shape from battery outward.
Any more ideas from you guys would be great.
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Limited 05 T4R -
Custom Built 6" Lift 
<--If you watch long enough he will do a backflip