Just found this in my Toyota repair manual and if made me remember this thread.
Test for Driveshaft vibration:
1. Drive vehicle and note engine speed at which the vibration is the most pronounced. Now shift into another gear and bring the engine to the same speed (rpm).
2. If the vibration occurs at the same engine speed regardless of what gear the transmission is in, the driveshaft is NOT at fault.
3. If vibration decreases or is eliminated when shifted into another gear at the same engine speeds, refer to the following.
4.Bent or dented driveshaft. Inspect and replace as necessary.
5. Undercoating or built up dirt, etc. on the driveshaft. Clean shaft thoroughly.
6. Worn Universal joint bearings. Replace the U-joints or driveshaft as necessary.
7. Driveshaft and/or companion flange out of balance. Check for missing weights on the shaft. Remove driveshaft and reinstall 180 degrees from original position, then recheck. Have driveshaft balanced if problem persists.
8. Loose driveshaft mounting bolts/nuts.
9. Defective center bearing, if so equpped.
10. Worn transmission rear bushing.
The lift will put extra strain and place parts in new postions that they have not been in consistently during the life of the car. I would just go through all the things on this list, starting with the cheapest and easiest. The problem should be fixable. You probably just exaggerated the unnoticeable little problems you had previously by installing the lift.