I think they took off enough material since the entire rotor surfaces (both sides) where cleanly cut. Assuming the rotor was held square in the lathe, it should be good.
A friend of mine who is a mechanic at a Toyota, GM, etc dealer (he works on the GM side) has a dial indicator kit that mounts on the studs and used to check rotor flatness. If they are out a couple thousands, you can begin to feel pulsating. He is bringing it home this Tuesday for me to use. One possibility is that the surface that the rotor mounts to is dirty, a little rust, etc and causing the problem. I'll let you guys know how the dial indicator tool works.
I didn't think about the rear brakes. I might pull the drums and get those checked while I'm at it.
What Tunda kit did you go with (last post)...?
Thanks!