7/19/20 UPDATE:
So I have pulled my 4.88 third and posted photos. Still had vibrations when I put it back in obviously. I am told Trail Gear sees nothing wrong with third based on photos. I have now pulled the 4.88 third out and dropped in an OEM 3.93(?) third. Something is still off. I definitely do not "feel" a vibration with the current third. However now at 60 to 70 mph there is still a groan. It is almost like a dump grah grah grah sound that pulses at about 1 second intervals. If I push above 70mph ( which is a chore with this gear ratio) the noise stops. If I drop into the upper 50's mph it stops. I did feel like it intensified in volume on a banked right hand turn ( causing a left sided weight transfer) transitioning from freeway A to freeway B.
It maybe worth noting that when I did my 500 mile change the gear fluid was silver. 60 miles into that new gear oil is when I pulled the third to take photos. That fluid was still silver. However pulled the third to do the 3.93 swap and it was clean with about 100(ish) miles on it, although some debri on plug.
In all honesty I still feel the options are trans output shaft? drive shaft ( angles vs ujoints)? or axles ( wheel bearings, seals).
Again my axle bearings and seals were done a year ago, they still seem fine and spin smooth with no noise when I pull them to do the diff swaps.
My drive shaft has no play when on the vehicle. I also pulled it again while doing the third swap. No catches or play in either end u joints.
I don't have a tool to accurately measure driveline angles so I can't comment on that.
From what I can see of the out put shaft with driveshaft removed the teeth all look fine...
With that said in all honesty with normal music levels, windows down, and traffic noise I wouldn't notice this at all with this 3.93 gear ratio. SO this may have been happening prior to re-gear and I just didn't pick up on it. And if I hadn't re-geared I'd likely be driving with no issue.
The 4.88 definitely intensify the groan and vibration. And I definitely want to use that gear ratio but need to solve this issue...
Thoughts?