Any thread that talks about re-gear is talking about both front and rear, anything else would not be possible unless you were 2wd. It is very common to re-gear the front clam shell. Two choices available 456 or 488. at least 50 threads on it.
What is not available is a way to re-gear the transfer case reduction gear. That is what many of us would love an option to do do.
Anyway,
No need to upgrade anything else with the gear change, besides the needle bearings on the drivers side of the diff to a bushing/journal bearing (but that has nothing to do with the gears, just will potentially be a problem down the road on most)
Up until recently, there were no viable options for upgrading the CVs. Within the past month or two RCV has released their Chromo CVs... They come with a lifetime warranty and are $2,500 a set. However, it will simply move the weak point to the diff. So, might be more risky to run them then not. At lest a CV is pretty easy to swap on the trail and carry a spare.