Huh, funny, I was also having this "chugging" sound but couldn't find anybody else talking about it back when it started for me. Same deal - only happened in gear and on the brakes. I always compared it to cam lope or how a 6BT chugs
When it first started during the summer it was out of the blue and real damn loud and very clearly coming from the passenger side, so I assumed maybe a valve guide wore out or something else cylinder head related - but it kinda rapidly tapered off and settled, then eventually it just totally stopped and the times it would come back it was maybe 1/4 of what it was (and tbh, sounds kinda good like that lol). Sometimes it would be quiet at one stop light, I'd drive 45 seconds to the next one and it'd start up. Right now it's totally gone for me for whatever reason, but at any rate it's clearly not cylinder head related. Otherwise it would've went downhill in a hurry. Maybe exhaust related?
The first time it happened was like 2-3 days after an oil change so I religiously checked everything I could think of but found no answer. I figured it was the beginning of something catastrophic and time would tell but clearly it's the opposite. Really curious to see what somebody finds out one day :noidea:
Does make me feel better that it's something common though!
Edit: I should say during this time I've replaced all evap valves/solenoids, threw some motorkote in the oil, changed the oil and replaced it with 40 weight (had Amsoil in when the sound started and put in some T6 after the change), replaced the PCV, changed my alt, checked the water pump pulley, cleaned the PS pump+replaced the sending line, replaced fuel pressure reg and fuel injectors - none of which made any difference on it from what I can tell. So if you're having this trouble and were considering any of these, maybe look elsewhere first