I wanted to keep the tent low as well, not that I had a chance of getting it in my garage, and I didn't want to spend close to another $400 on a Yakima type rack so I built my own for less than $70. I bought 1 10' section of steel track, 4 pipe hanger u-bolts, assorted nylock nuts, a can of self etching primer, and a can of rust inhibiting HD black spray paint to make my own and it works fantastic.
I cut the track to 48", painted it an all the hardware, then mounted it direct to the factory roof rails on my '11 TE. The u-bolts fit perfectly around the roof rack and I only had to enlarge one of the existing holes in the steel track to get a centered mounting solution. The track was not the conduit you see at lower or home depot used for electrical work, it is steel and I had to get it at a local builders supply store. Took about 2 hours, should have taken 3 to let the paint dry more but I was excited to get the tent mounted and into the woods.
The only downside to mounting it so close to the roof is how hard it was to get the nuts and bolts started and tightened down. My CVT RTT came with the ratcheting box wrenches and that made all the difference when compared to trying to use a socket wrench. It's wobble free and super sturdy after 1 month, three trips, and plenty of bumpy road miles later.