Transmission issues and learning about stuff! (Insight welcome!)

dblcabmn

New member
Incoming wall of text! (with pictures at the bottom)

So i bought a 1999 California emissions built-02/99 4WD Automatic 4Runner Limited with known transmission problems the other day. I knew that swapping the trans was going to be the end result, but i’m a curious guy and like to at least try some simple fixes before going whole hog and throwing the book at the problem. I’m also looking to get a better understand of how the A340F functions and what these symptoms mean has failed for my own edification. So yes, i could have used the cash spent troubleshooting towards the replacement trans, but that’s not how i do.

Symptoms when bought:
-On startup, can shift to R or D and transmission grabs strong and moves vehicle 5ft. (all that was tested)
-Shift through gears a few more times or go back to Park and idle for 30 seconds, all gears non-functional.
-Trans fluid dark dark brown to black with strong burnt smell. (see pic)
-Screeching/howling/weird sound from general torque converter area
-Seem’d over filled. Obviously burnt.
-Fine, paid next to nothing for it, had it towed home, started diagnosing.
-Only CEL code thrown was P0330 for a knock sensor 2 circuit.

First thing i did was drop the pan.
-Nice ~1/8” coating of dark brown/black sludge on bottom. magnets coated in very fine greasy sludge but no chunks.
-Very burnt fluid as expected, paint seems to have burnt/peeled a bit inside pan.
-Filter was tarnished brown and burnt, screen clogged, solenoids the same way. (See pic)

Ordered OEM filter, aftermarket solenoid kit.
-Installed new OEM filter and eBay solenoid kit. (see pic)
-Threw a NAPA Raybestos Magnafine chinese knock off filter on return line for giggles.
(Theory being, it would filter the other 7+ qts of burnt fluid prior to hitting my new OEM filter.)
-New FIPG
-Put ~5qts of Valvoline Maxlife ATF in there, measured and ran through the gears 15 seconds at a time.
-At start up, most of the TC area sounds are gone!

Test drive
-Let it sit and idle while I shifted through the gears for a bit with foot on brake, check levels a few times.
-Put in D and… it moves! (usually would ‘fully slip’ after 30 seconds of idle or sitting in a gear)
-Drive down the block and back… it’s still moving!
-Well shoot. Do a 10 point turn while chatting with my neighbor. Shifts from R to D and back fine
-Getting excited now. My hail mary shot in the dark might have worked…
-Truck has now been running and moving for 30-45 minutes, driven 1-2 miles around the neighbor hood. WOW!
-Ok, main road test time. Get up to 50Mph, drive 2-3+ miles. Stop, turn, accelerate a few times. Shifts through gears well OMG DID IT REALLY WORK!?
-Mile ~7 or so hits and… RPMs rise, truck coasts… truck not moving when throttle applied, RPMs… no. noooooooooo.
-Pull over, Shift to P count to 15, shift to D, nothing. RPMs rise and truck doesn’t move.
-Shut down truck. Hmmm, maybe fluid level low? No leaks on ground, fittings tight, check level: right between hot hashes. Huh. 3-5 minutes pass
-Start truck, shift D, It goes! Ok, let’s get home. Annnnd 6 blocks later, slip slip slip.
-Repeat process, coast to slow speed, pull over, shift P, shut down, wait 3-5 minutes. Start, shift D drive 4-6 blocks slipping returns.
-Repeat until i get home. Clean up, drink beer, ponder life, go to sleep.

Thought process/next day.
-Ok, I read about knock off chinese Raybestos Magnefines being junk. Let’s pull that out.
-Start truck, back to symptoms when bought. No movement after ~30 seconds.
-Ok, i read about a long shot faulty TPS causing slipping. Off-brand cheapo is installed, replace with OEM i had laying around.
-Start truck, same symptoms when bought. No movement after ~30 seconds.

Things that strike me as odd/general assumptions/questions:
-I figured that with the condition of the trans filter and solenoids, at start, the trans could build just enough pressure for a few shifts and minor movement, after that, the sludge would be packed into the strainer, flow would drop, no pressure, leads to burning out the TC and possibly pump. Shutting it down for a few minutes would release some sludge, repeat. Initially, it had to sit for 15-30+ minutes to return to brief operation.
-After my OEM strainer and eBay solenoid kit replacement, i was able to ‘drive it normally’ for quite awhile! Then problems returned. Why did i get a glimmer of hope?
-I noticed that when i pulled the fake-nafine filter out, the fluid at that location (return lines from cooler) was dark brown/nasty. (though slightly less nasty than when i first serviced it, leading me to believe that the new ATF was able to mingle with the old at least for a little bit.) BUT the fluid on the dip stick was still pretty dang new looking (though it did have some brownish hues/coloration.) and now my levels are off. (reading at hot hashes when fully cold/idling for less than 2 minutes and a shift through the gears. Air temp 38*F)
-Several times after the symptoms returned, i would start it, shift to R, move 2 feet, shift to D, move 2 feet, until it slipped/under 30 seconds. If i shift to P, shut down, and turn right back on (within 10 seconds) i could repeat the process for about the same amount of time. What gives?
-When it does work, i get nice solid gear engagement and can feel the drive line tense. And it shifted smoothly for the few miles it did run. When it fails it goes from working to not almost instantly. There’s very little in-between.
-My shifter is super sloppy. Meaning, when selecting a gear, it’s very easy to pull D into 2 for instance. It won’t actually move there on the shifter until you depress the thumb button, but, on the gauge cluster, the light will either go dark or 2 will illuminate. Similarly R has a lot of play as well. I’ve read about replacing a few bushings in the shifter mechanism but unless there’s a chance of it solving my root problem, i’m not going to bother at this point.
-I notice that both the cooler send and return lines are quite compressible (i can pinch them nearly closed with a little force) even after idling the truck for 15+ minutes. Shouldn’t these be firm when the truck is running?

TL;DR - 4Runner with A340F wants to grab a gear and go, but seems to get bored quickly and decide to stop engaging any gears after a short time until truck is power cycled. What does this mean?

And because everyone likes pictures:

Original Fluid
32396076035_e994a8e8b9_c.jpg


Sludgy sludge sludge
32261611600_69fb26ca83_c.jpg


Nasty strainer
32487913432_0452ee44ac_c.jpg


Nice and fresh
32261632420_06816f0439_c.jpg
 
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Polishing a turd? Pink milkshake? A used trans swap is a good use of time. From someone who has been in your shoes and replaced it used model going strong 50k later. Lots of towing. Transcooler.
 
Yeah... tranmission fluid should never have sludge... it's toast. Actually, beyond toast. There might be metal components that have warped or shaved beyond all shavings that you're not aware of. Obviously once it heats up the problems start.

Now that I've pulled a transmission, if you have a friend and a transmission jack this is a very doable job. It's heavy, and awkward, but doable. Just take your time and you'll have it swapped in no time.

Used unit > reman'd. Reman'd ones are just too pricey and these transmissions don't go bad very often.
 
You were lucky that you even got a minor result. That transmission was a goner from the start.


Sent from my iPhone using Tapatalk
 
Incoming wall of text! (with pictures at the bottom)

So i bought a 1999 California emissions built-02/99 4WD Automatic 4Runner Limited with known transmission problems the other day. I knew that swapping the trans was going to be the end result, but i’m a curious guy and like to at least try some simple fixes before going whole hog and throwing the book at the problem. I’m also looking to get a better understand of how the A340F functions and what these symptoms mean has failed for my own edification. So yes, i could have used the cash spent troubleshooting towards the replacement trans, but that’s not how i do.

Symptoms when bought:
-On startup, can shift to R or D and transmission grabs strong and moves vehicle 5ft. (all that was tested)
-Shift through gears a few more times or go back to Park and idle for 30 seconds, all gears non-functional.
-Trans fluid dark dark brown to black with strong burnt smell. (see pic)
-Screeching/howling/weird sound from general torque converter area
-Seem’d over filled. Obviously burnt.
-Fine, paid next to nothing for it, had it towed home, started diagnosing.
-Only CEL code thrown was P0330 for a knock sensor 2 circuit.

First thing i did was drop the pan.
-Nice ~1/8” coating of dark brown/black sludge on bottom. magnets coated in very fine greasy sludge but no chunks.
-Very burnt fluid as expected, paint seems to have burnt/peeled a bit inside pan.
-Filter was tarnished brown and burnt, screen clogged, solenoids the same way. (See pic)

Ordered OEM filter, aftermarket solenoid kit.
-Installed new OEM filter and eBay solenoid kit. (see pic)
-Threw a NAPA Raybestos Magnafine chinese knock off filter on return line for giggles.
(Theory being, it would filter the other 7+ qts of burnt fluid prior to hitting my new OEM filter.)
-New FIPG
-Put ~5qts of Valvoline Maxlife ATF in there, measured and ran through the gears 15 seconds at a time.
-At start up, most of the TC area sounds are gone!

Test drive
-Let it sit and idle while I shifted through the gears for a bit with foot on brake, check levels a few times.
-Put in D and… it moves! (usually would ‘fully slip’ after 30 seconds of idle or sitting in a gear)
-Drive down the block and back… it’s still moving!
-Well shoot. Do a 10 point turn while chatting with my neighbor. Shifts from R to D and back fine
-Getting excited now. My hail mary shot in the dark might have worked…
-Truck has now been running and moving for 30-45 minutes, driven 1-2 miles around the neighbor hood. WOW!
-Ok, main road test time. Get up to 50Mph, drive 2-3+ miles. Stop, turn, accelerate a few times. Shifts through gears well OMG DID IT REALLY WORK!?
-Mile ~7 or so hits and… RPMs rise, truck coasts… truck not moving when throttle applied, RPMs… no. noooooooooo.
-Pull over, Shift to P count to 15, shift to D, nothing. RPMs rise and truck doesn’t move.
-Shut down truck. Hmmm, maybe fluid level low? No leaks on ground, fittings tight, check level: right between hot hashes. Huh. 3-5 minutes pass
-Start truck, shift D, It goes! Ok, let’s get home. Annnnd 6 blocks later, slip slip slip.
-Repeat process, coast to slow speed, pull over, shift P, shut down, wait 3-5 minutes. Start, shift D drive 4-6 blocks slipping returns.
-Repeat until i get home. Clean up, drink beer, ponder life, go to sleep.

Thought process/next day.
-Ok, I read about knock off chinese Raybestos Magnefines being junk. Let’s pull that out.
-Start truck, back to symptoms when bought. No movement after ~30 seconds.
-Ok, i read about a long shot faulty TPS causing slipping. Off-brand cheapo is installed, replace with OEM i had laying around.
-Start truck, same symptoms when bought. No movement after ~30 seconds.

Things that strike me as odd/general assumptions/questions:
-I figured that with the condition of the trans filter and solenoids, at start, the trans could build just enough pressure for a few shifts and minor movement, after that, the sludge would be packed into the strainer, flow would drop, no pressure, leads to burning out the TC and possibly pump. Shutting it down for a few minutes would release some sludge, repeat. Initially, it had to sit for 15-30+ minutes to return to brief operation.
-After my OEM strainer and eBay solenoid kit replacement, i was able to ‘drive it normally’ for quite awhile! Then problems returned. Why did i get a glimmer of hope?
-I noticed that when i pulled the fake-nafine filter out, the fluid at that location (return lines from cooler) was dark brown/nasty. (though slightly less nasty than when i first serviced it, leading me to believe that the new ATF was able to mingle with the old at least for a little bit.) BUT the fluid on the dip stick was still pretty dang new looking (though it did have some brownish hues/coloration.) and now my levels are off. (reading at hot hashes when fully cold/idling for less than 2 minutes and a shift through the gears. Air temp 38*F)
-Several times after the symptoms returned, i would start it, shift to R, move 2 feet, shift to D, move 2 feet, until it slipped/under 30 seconds. If i shift to P, shut down, and turn right back on (within 10 seconds) i could repeat the process for about the same amount of time. What gives?
-When it does work, i get nice solid gear engagement and can feel the drive line tense. And it shifted smoothly for the few miles it did run. When it fails it goes from working to not almost instantly. There’s very little in-between.
-My shifter is super sloppy. Meaning, when selecting a gear, it’s very easy to pull D into 2 for instance. It won’t actually move there on the shifter until you depress the thumb button, but, on the gauge cluster, the light will either go dark or 2 will illuminate. Similarly R has a lot of play as well. I’ve read about replacing a few bushings in the shifter mechanism but unless there’s a chance of it solving my root problem, i’m not going to bother at this point.
-I notice that both the cooler send and return lines are quite compressible (i can pinch them nearly closed with a little force) even after idling the truck for 15+ minutes. Shouldn’t these be firm when the truck is running?

TL;DR - 4Runner with A340F wants to grab a gear and go, but seems to get bored quickly and decide to stop engaging any gears after a short time until truck is power cycled. What does this mean?

And because everyone likes pictures:

Ordinarily I wouldn't advocate for people to play with dead things, but in the name of discovery — good job. Now stick a fork in that sucker cause it's done.

I can't help but admire your style. You knew you were going to junk that tranny but decided to get in there and mess with it just to satisfy your curiosity. I'd do the same if time and money were no issue.

How mine looked after 380,000 miles or so:

 
Last edited:
I would have done a full fluid exchange and not just drop the pan. There is still a ton of shity fluid in your tranny but in all honestly, it is still probably toast.

Good luck
 
Thanks everyone. Wow, that 380k mile pan is in great shape!

Yeah I definitely wanted a learning experience and that's what i got! My only left over thought is, what part(s) are actually bad? What causes this specific symptom?

All in i spent:

$39 OEM Strainer
$49 eBay Solenoids
$7 Ultra Black RTV
$18 1Gal jug of ATF fluid
$9 1/2 of a 1Gal jug of ATF fluid
$26 for the inline filter, clamps, and splicer to remove it.
______
$148 to learn a lot and get comfortable with the trans.

And i can/will re-use the new OEM strainer, the other half of the RTV sealant, maybe the inline filter (but probably not) and i'll have the solenoids laying around should the new-to-me trans eventually develop shifting issues. So, call it $50 for consumables and $50 for a lesson?

So, yeah. Good times.
 
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... My only left over thought is, what part(s) are actually bad? What causes this specific symptom?
...

Well in that case, if I were you I would take the tranny to a friend who works on or knows all about the internals, take it apart and find out what wore out. Then let us know.

BTW - what type (used, rebuilt locally or jasper kind of thing) of replacement trans are you going with? :cowboy:
 
I'm searching Car-part.com for a local-ish sub150k mileage unit from a wrecked 4R. Ideally closer to 100k. I too have read about remans/rebuilts not being a wise choice. And the $2k premium over a pulled unit is just laughable.

There's a handful of Federal spec'd ones that i'd snap up if they were compatible. Bummer i have the Cali spec!

There are a few in an acceptable range from me. But i might splurge a few hundred more for a lower mileage one and getting it shipped... not sure yet!
 
I'm searching Car-part.com for a local-ish sub150k mileage unit from a wrecked 4R. Ideally closer to 100k. I too have read about remans/rebuilts not being a wise choice. And the $2k premium over a pulled unit is just laughable.

There's a handful of Federal spec'd ones that i'd snap up if they were compatible. Bummer i have the Cali spec!

There are a few in an acceptable range from me. But i might splurge a few hundred more for a lower mileage one and getting it shipped... not sure yet!

Could you elaborate on this? I thought either federal spec or california spec was fine as long it was certain years. In my case I would need a '00 or '99 transmission...

I bought a used transmission without checking the spec but it's from the same year as my 4runner, 2000.
 
Oh man, i've read so many threads on this and 99% of the answer was, "We don't have a solid answer!" and no one has done a side-by-side detailed comparison with pictures.

This guy just recently did it ('98 fed into '99 Cali):
http://www.toyota-4runner.org/3rd-g...lacement-ca-vs-fed-emissions.html#post2537108

Here's some more vague possible answers:
http://www.toyota-4runner.org/3rd-g...-california-emissions-system.html#post1108642


That said, here's the follow up response from Toyota:

"Dear Mr. Dblcabmn,

Thank you for contacting Toyota Motor Sales, U.S.A., Inc., [...]

We apologize for your concern regarding the transmission of your 1999 Toyota 4Runner Limited V6 4WD, which has California emissions (see attachment).

We apologize as we do not recommend or assist with modifying our vehicles from the original factory specifications, such as using a transmission model that is not the original model from the factory.[...]"


While talking on the phone with the rep he stated (I'm paraphrasing) 'that the valve bodies are likely different and there may be additional electrical connections (but could not confirm part numbers/visual indicators to look for.) The ECU for the Cali expects the Cali transmission. The Federal apparently might technically fit, and might work with the proper Tcase, but the transmission itself would not operate as designed.'

In my opinion, and as a 'Do your research, do the work once, do it right' kind of person. (I include this 'troubleshooting/learning process' in my research portion :hatsoff: ) Use the proper spec'd transmission to avoid having to revisit the issue once repairs are complete.

Good luck, and if you have the time, please post some pictures/comparisons once you drop your old one out! Especially if there's a difference and you discover you have a mis-match of emission spec.
 
There shouldn't be an issue with swapping CA to Fed spec transmissions. I now have a '97 4WD Fed spec trans in my '99 2WD CA spec truck. I swapped out a few external sensors that were in better shape on my trans (neutral position switch and temp sensor) and everything works 100%. If anything, the older trans is better! (lower miles) I kept my old 2WD trans in case the new one has a problem...

You can run into a problem with 01/02 transmissions vs. 96-00 transmissions (electric vs. cable line pressure control), but inside each group it shouldn't be a problem. The valve bodies are different depending on year, but the external control is the same, as far as I can tell.

-Charlie
 
Oh man, i've read so many threads on this and 99% of the answer was, "We don't have a solid answer!" and no one has done a side-by-side detailed comparison with pictures.

This guy just recently did it ('98 fed into '99 Cali):
http://www.toyota-4runner.org/3rd-g...lacement-ca-vs-fed-emissions.html#post2537108

Here's some more vague possible answers:
http://www.toyota-4runner.org/3rd-g...-california-emissions-system.html#post1108642


That said, here's the follow up response from Toyota:

"Dear Mr. Dblcabmn,

Thank you for contacting Toyota Motor Sales, U.S.A., Inc., [...]

We apologize for your concern regarding the transmission of your 1999 Toyota 4Runner Limited V6 4WD, which has California emissions (see attachment).

We apologize as we do not recommend or assist with modifying our vehicles from the original factory specifications, such as using a transmission model that is not the original model from the factory.[...]"


While talking on the phone with the rep he stated (I'm paraphrasing) 'that the valve bodies are likely different and there may be additional electrical connections (but could not confirm part numbers/visual indicators to look for.) The ECU for the Cali expects the Cali transmission. The Federal apparently might technically fit, and might work with the proper Tcase, but the transmission itself would not operate as designed.'

In my opinion, and as a 'Do your research, do the work once, do it right' kind of person. (I include this 'troubleshooting/learning process' in my research portion :hatsoff: ) Use the proper spec'd transmission to avoid having to revisit the issue once repairs are complete.

Good luck, and if you have the time, please post some pictures/comparisons once you drop your old one out! Especially if there's a difference and you discover you have a mis-match of emission spec.

Thanks for that information. I knew about the valve bodies that may be different but I thought that was a difference in years and not between specs. I guess I read wrong. I suppose there is no definitive answer right now. I'm having a shop install the transmission for me (they are currently in the process) so I guess they'll tell me if it doesn't work properly. The sticker on my hood says 49-state emissions but I actually have two catalytic converters making mine California emissions spec'ed.

It's a transmission from a 2000 4runner limited with the multi-mode t-case so everything will line up properly to my 4runner. Now it's a matter of whether the transmission behaves as intended. :noidea:
 
There shouldn't be an issue with swapping CA to Fed spec transmissions. I now have a '97 4WD Fed spec trans in my '99 2WD CA spec truck. I swapped out a few external sensors that were in better shape on my trans (neutral position switch and temp sensor) and everything works 100%. If anything, the older trans is better! (lower miles) I kept my old 2WD trans in case the new one has a problem...

You can run into a problem with 01/02 transmissions vs. 96-00 transmissions (electric vs. cable line pressure control), but inside each group it shouldn't be a problem. The valve bodies are different depending on year, but the external control is the same, as far as I can tell.

-Charlie

This is reassuring.
 
I hope those swaps work for you in the long run, i really do. And to clarify, i do not have hard evidence that the valve bodies are actually different as the Toyota rep could not give me any further detail on the subject. So, take my ramblings with a grain of salt.

My personal risk tolerance directs me to trust that in such a complicated component where the manufacturer makes the effort to classify different units for different models, minor differences can matter. Since this is not our daily driver yet, I'm able to take a bit more time finding the best-fit. I'm aiming for a like-for-like swap from a 01/99 to 05/99 Cali spec.
 
I hope those swaps work for you in the long run, i really do. And to clarify, i do not have hard evidence that the valve bodies are actually different as the Toyota rep could not give me any further detail on the subject. So, take my ramblings with a grain of salt.

My personal risk tolerance directs me to trust that in such a complicated component where the manufacturer makes the effort to classify different units for different models, minor differences can matter. Since this is not our daily driver yet, I'm able to take a bit more time finding the best-fit. I'm aiming for a like-for-like swap from a 01/99 to 05/99 Cali spec.

I will report back with my findings to help those in the same predicament as me. I contacted the wrecking yard I bought the tranny from and they confirmed it's a federal spec. We'll see how this all pans out. Fingers crossed.

EDIT: Just an FYI. http://www.toyota-4runner.org/3rd-gen-t4rs/205257-automatic-transmission-differences.html But this is for federal to federal unfortunately.
 
Last edited:
your converter went bad..

Incoming wall of text! (with pictures at the bottom)

So i bought a 1999 California emissions built-02/99 4WD Automatic 4Runner Limited with known transmission problems the other day. I knew that swapping the trans was going to be the end result, but i’m a curious guy and like to at least try some simple fixes before going whole hog and throwing the book at the problem. I’m also looking to get a better understand of how the A340F functions and what these symptoms mean has failed for my own edification. So yes, i could have used the cash spent troubleshooting towards the replacement trans, but that’s not how i do.

Symptoms when bought:
-On startup, can shift to R or D and transmission grabs strong and moves vehicle 5ft. (all that was tested)
-Shift through gears a few more times or go back to Park and idle for 30 seconds, all gears non-functional.
-Trans fluid dark dark brown to black with strong burnt smell. (see pic)
-Screeching/howling/weird sound from general torque converter area
-Seem’d over filled. Obviously burnt.
-Fine, paid next to nothing for it, had it towed home, started diagnosing.
-Only CEL code thrown was P0330 for a knock sensor 2 circuit.

First thing i did was drop the pan.
-Nice ~1/8” coating of dark brown/black sludge on bottom. magnets coated in very fine greasy sludge but no chunks.
-Very burnt fluid as expected, paint seems to have burnt/peeled a bit inside pan.
-Filter was tarnished brown and burnt, screen clogged, solenoids the same way. (See pic)

Ordered OEM filter, aftermarket solenoid kit.
-Installed new OEM filter and eBay solenoid kit. (see pic)
-Threw a NAPA Raybestos Magnafine chinese knock off filter on return line for giggles.
(Theory being, it would filter the other 7+ qts of burnt fluid prior to hitting my new OEM filter.)
-New FIPG
-Put ~5qts of Valvoline Maxlife ATF in there, measured and ran through the gears 15 seconds at a time.
-At start up, most of the TC area sounds are gone!

Test drive
-Let it sit and idle while I shifted through the gears for a bit with foot on brake, check levels a few times.
-Put in D and… it moves! (usually would ‘fully slip’ after 30 seconds of idle or sitting in a gear)
-Drive down the block and back… it’s still moving!
-Well shoot. Do a 10 point turn while chatting with my neighbor. Shifts from R to D and back fine
-Getting excited now. My hail mary shot in the dark might have worked…
-Truck has now been running and moving for 30-45 minutes, driven 1-2 miles around the neighbor hood. WOW!
-Ok, main road test time. Get up to 50Mph, drive 2-3+ miles. Stop, turn, accelerate a few times. Shifts through gears well OMG DID IT REALLY WORK!?
-Mile ~7 or so hits and… RPMs rise, truck coasts… truck not moving when throttle applied, RPMs… no. noooooooooo.
-Pull over, Shift to P count to 15, shift to D, nothing. RPMs rise and truck doesn’t move.
-Shut down truck. Hmmm, maybe fluid level low? No leaks on ground, fittings tight, check level: right between hot hashes. Huh. 3-5 minutes pass
-Start truck, shift D, It goes! Ok, let’s get home. Annnnd 6 blocks later, slip slip slip.
-Repeat process, coast to slow speed, pull over, shift P, shut down, wait 3-5 minutes. Start, shift D drive 4-6 blocks slipping returns.
-Repeat until i get home. Clean up, drink beer, ponder life, go to sleep.

Thought process/next day.
-Ok, I read about knock off chinese Raybestos Magnefines being junk. Let’s pull that out.
-Start truck, back to symptoms when bought. No movement after ~30 seconds.
-Ok, i read about a long shot faulty TPS causing slipping. Off-brand cheapo is installed, replace with OEM i had laying around.
-Start truck, same symptoms when bought. No movement after ~30 seconds.

Things that strike me as odd/general assumptions/questions:
-I figured that with the condition of the trans filter and solenoids, at start, the trans could build just enough pressure for a few shifts and minor movement, after that, the sludge would be packed into the strainer, flow would drop, no pressure, leads to burning out the TC and possibly pump. Shutting it down for a few minutes would release some sludge, repeat. Initially, it had to sit for 15-30+ minutes to return to brief operation.
-After my OEM strainer and eBay solenoid kit replacement, i was able to ‘drive it normally’ for quite awhile! Then problems returned. Why did i get a glimmer of hope?
-I noticed that when i pulled the fake-nafine filter out, the fluid at that location (return lines from cooler) was dark brown/nasty. (though slightly less nasty than when i first serviced it, leading me to believe that the new ATF was able to mingle with the old at least for a little bit.) BUT the fluid on the dip stick was still pretty dang new looking (though it did have some brownish hues/coloration.) and now my levels are off. (reading at hot hashes when fully cold/idling for less than 2 minutes and a shift through the gears. Air temp 38*F)
-Several times after the symptoms returned, i would start it, shift to R, move 2 feet, shift to D, move 2 feet, until it slipped/under 30 seconds. If i shift to P, shut down, and turn right back on (within 10 seconds) i could repeat the process for about the same amount of time. What gives?
-When it does work, i get nice solid gear engagement and can feel the drive line tense. And it shifted smoothly for the few miles it did run. When it fails it goes from working to not almost instantly. There’s very little in-between.
-My shifter is super sloppy. Meaning, when selecting a gear, it’s very easy to pull D into 2 for instance. It won’t actually move there on the shifter until you depress the thumb button, but, on the gauge cluster, the light will either go dark or 2 will illuminate. Similarly R has a lot of play as well. I’ve read about replacing a few bushings in the shifter mechanism but unless there’s a chance of it solving my root problem, i’m not going to bother at this point.
-I notice that both the cooler send and return lines are quite compressible (i can pinch them nearly closed with a little force) even after idling the truck for 15+ minutes. Shouldn’t these be firm when the truck is running?

TL;DR - 4Runner with A340F wants to grab a gear and go, but seems to get bored quickly and decide to stop engaging any gears after a short time until truck is power cycled. What does this mean?

And because everyone likes pictures:

Original Fluid
32396076035_e994a8e8b9_c.jpg


Sludgy sludge sludge
32261611600_69fb26ca83_c.jpg


Nasty strainer
32487913432_0452ee44ac_c.jpg


Nice and fresh
32261632420_06816f0439_c.jpg


Your converter went bad for whatever reason take your pick. The fluid combined with the converter material can not make it past the filter with enough pressure volume (also why it reads high on stick when cold as it cant even drain back down) The black is from your converter, the brown is clutches. If you didn't starve it for fluid too long (the whining sound) just needs an overhaul kit and a quality converter.. You let it sit and all the gunk drains out and it works, you drive it around and it stops the filter back up and slips or stops pulling. happens all the time its the classic converter failure. 50% of all transmissions that come into my shop have this issue. The shop his been here since 1968.
 
Thank you so much for that confirmation!

This whole pile will be ending up in the scrap heap (or would a re-builder give me a few bills for it?) and replaced with a functioning unit. I briefly thought about replacing just the TC, but i'm sure other damage has been done due to it's history and what you described.
 
Find yourself a relatively low mileage used unit from a reputable place, a warranty would be a plus. In my area, you can find a used one at a junk yard with approximately 150k miles for about $300-600.

From what I've read, its not too bad to swap tranny's on these rigs. There has been far too many people with rebuilds or remans that have failed for me to ever consider it an option. For the most part, these are pretty solid transmissions.
 

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