you can re shim them, not that bad to do, you just have to carefully measure the shims (with a good mic) that are in there and then replace with the shim that's the difference over. the problem is last I checked, you have to buy the whole re-shim kit, and it may be a little pricey. If you can measure them all, you may find that one or two are over spec and can be re-arranged to get them all in spec. Also, If I remember correctly, you should be taking measurements with a feeler gauge at operating temperature. If you didn't and your only out by a couple thousandths, you may actually be in spec anyway.
I have seen these 3.4 engines tap a little because of this but it probably wont hurt the engine IE (it will probably still run forever) if you decide not to re-shim them.