Just saying this because you didnt mention it, did you check the wires? Check all your grounds?
I recently replaced my ECM... it ran like crap before I replaced it but it did have spark. Seems like I read somewhere that 15-20 year old Toyota trucks are seeing more computer failures lately.
Sounds like that's the only thing you haven't verified.
This is at work. My boss has been a mechanic for over 35 years we've done everything possible. There has to be a short somewhere. The trucks probably going to get totaled or sold for partsrent a power probe III. You pay autozone, then when you return it your money is refunded.