The issue surrounds a particular cylinder and the cooling system. Aluminum is an awesome alloy, but it is no where near as predictable as old fashioned iron. One engines that tend to have these type of problems; it usually centers around an internal cooling channel design that doesn't quite cut it for one part of the block.
You can strengthen the gasket, sure, but it would take a new block that is redesigned to actually fix the underlying problem.
This is exactly what killed so many 3.0's in the 90's. That issue was much worse and happened much sooner. 40k miles and engines were popping.
My understanding is that early 3VZE motors were dropping like flies in the 90s due to bad head bolt torque numbers off the assembly line. That's what the recall was about - later 3VZEs didn't have this problem and weren't subject to the recall.
3VZE motors die now because the head gasket gets cooked by the exhaust crossover, but it takes a lot of years/miles to get there, and I've been told it's due to the actual gasket they used being inferior to the asbestos gasket the engineers originally wanted to use.
Neither of those has anything to do with the block or what it's made of.
I owned 2 of the 2nd generation 4runners. A 1990, and a 1992. All years had issues, even after they applied the re-design and as far as I can remember, it was never to do with head bolts and was always surrounding the head gasket failing at one particular cylinder due to heating issues.
I clearly remember speaking with a Toyota tech some years ago as mine went in for the recall and talking specifically about heating the the gasket material. The use of aluminum heads with an iron block was part of the problem as the two materials expand under heat differently. This was years ago, but this sticks in my mind as the issue.