Stethoscope, get one and listen around everywhere. Better yet, a plastic or fiberglass tube with a hose on it works just as good, and when you find an air leak, it blows air in your ear!
Exhaust gasket? Sounds like you could have one in that video, but its too hard to tell. Using stethoscope around all 4 tubes at the head will find out pdq.
Bent valve? That's a very rhythmic clacking sound, and its not on every fire. Have you readjusted your valves yet?
Leakdown test. This is free! Get the test gauge from parts store, check compression on engine, then if all is well, try leakdown test. That will determine after valve readjustment if the sound is still there, whether or not you have a bent valve or bad seat.
First thing to do with ANY new vehicle to you, is do a full tune-up. Not just change oil and filter either, I mean FULL tune up!
Change Oil
Change oil filter
Change air filter
Change plugs
check/change plug wires
change cap/rotor
time engine
set valves
check throttle body and clean if dirty
change belts
If it still runs strange after all of that, or you have inexplicable noises, then you go to diagnostic mode! Compression test will tell you all sorts of things, and its so easy to do, just unscrew plugs from engine, disconnect plug from coil or fuse for coil(so you don't get spark while testing), screw in adapter, connect meter, crank engine, write pressure down, move to next cylinder. Rinse, repeat, check numbers against specs for engine. If all is good, do leakdown test. Slightly harder but nothing a person who can handle a ratchet can't handle!
If all of that is good, then look for non-obvious stuff, like timing chain tensioner or chain itself, but I bet you get all that stuff above done, you'll find out a lot more about that engine.
Or, just say fawk it and run it till it blows up, and hope you have the other engine built before it does!