I guess you stating you neglected to mention "flushing" in your title was your apology for basting me for giving my opinion to the question you asked in your title and the body of your question about "bleeding".
When you start flaming someone for their knowledge (or lack of) you lose all credibly. If you find anything I said that is wrong in my post, be sure to let everyone know. In my over 40 years wrenching on cars, I have serviced every type of brake systems from 1965 to 2004. Specifically on the 4th Gen. T4R I have replaced 1 master cylinder, swapped out 6 front calipers, replaced front & rear rotors and pads, and repaired the motor on the MC. I have done fluid exchanges and bled air from the systems both the manual way and with the help of the motor on the system and I never had any problems. If your entire point of your post is that if you don't have the factory tool to get all the old fluid out, then your being more anal-retentive than me and you probably really get upset because when you do an engine oil change there might be 4 ounces of old oil left in the engine. The amount of oil in the master cylinder, excluding the reservoir, cannot be more than a few ounces.
I agree, the purpose of this forum is the share information and to learn from others experiences both positive and negative. I hope you learn all you can from this forum about your 4Runner, just be careful and don't piss too many people off because the answers to your questions may not get answered.