What the heck was the previous owner running that pulley on...? Anyway, that doesn't really matter.
So now I need to tell you that from personal experience, tuning with 6 Injectors is a HUGE pain in the rear. I paid a very well known professional here in the Seattle/Bellevue (Tuned my cousins 750+ HP Turbo M3 and my Dads 916/512) area hundreds and hundreds of dollars and even he told me he was having trouble, and couldn't get it right after probably 50 pulls on the Dyno. Granted, I was not running the FTC1 (I have records that my vehicle had it at one time, but was removed because it was doing something crazy and keeping the fuel pump running when the vehicle was off).
When I got the 7th injector kit the driveability of my 4Runner was FAR superior than the 6 injector setup and the guy who was tuning said he felt bad charging me for tuning, and only charged me for the 2 dyno runs (that's all it took) and said it was 100x easier to tune. Street tuning myself, I can say the same.
If you're dead set on running those 6 injectors I have my old maps from when I was running them as well if you want them. I highly recommend that URD pulley though... I think I remember you lving near sea level, and I feel that's far too much boost without much more expensive modificiations...
I also have a copy of the spit second R4 software I could send you, if needed.