What warrants the rebuild? I have 163k miles on my 3.4. I added the supercharger when it had around 156k on it. I just did a compression test last week. 180 psi on all cylinders. The engine produces compression just like a new one. You may want to do a compression test, and reevaluate the whole engine rebuild thing. If i were you i would go ahead and put the supercharger on, and spend my $$ on fuel, and transmission upgrades.
But if you are doing it from a performance standpoint, you may want to run lower compression pistons. Lower compression will allow you to run more boost safely.