The E-locker is a true locker, not a limited slip.
The only 4runners with both a rear diff lock and a center diff lock are the 99 - 2000 Limiteds and the somewhat rare 2009 Trail Editions. EDITED TO ADD: Not all 99-00 Limited 4x4s had the rear diff lock. Some do, some don't. The rear diff lock was a separate option, not a part of the Limited package.
Center Diff lock is for those vehicles with multi-mode 4wd (MM for short.) MM means you can run in 4wd on a hard paved road, basically like having an AWD car for better grip on wet or intermittently slippery surfaces.
In order for a vehicle to have MM, it has to have a center differential. The center differential is what allows the vehicle to run on hard pavement in 4wd without damaging the drivetrain.
The 3rd gens had a center diff on the 99-2000 Limiteds only, and on all 01-02 models. All 4th gen 4x4 models have the center diff.
The only downside to a center diff is that when going off-road, or on very low traction surfaces, the center diff can cause you to lose traction with one axle or the other, so for that reason, all models with a center diff also have a center diff lock, that allows you to lock out the center diff. When you lock out the center diff, the vehicle performs as if there was no center diff, or, in other words, like any standard 4x4.
The 99-2000 Limiteds had a modified J-shifter with a button on the side for 4wd. Putting the J-shifter in it's forward most position was 2wd (RWD). Then press the button and it goes to 4wd/open center diff (or, AWD mode if you prefer.) Then, if you pull the J-shifter down one notch (towards the rear) it goes to 4wd/locked center diff (or "conventional 4wd" if you prefer.)
On those 99-00 Limiteds, the rear diff lock button was on the dashboard to the left of the steering column. Unless modified, the RR diff lock will only work in 4 lo. Also I believe there was no 4 lo "center diff unlocked" mode. If you were in 4 lo, your center diff was always locked.
I'm not 100% sure but I believe the 01-02 models had a simpler shift pattern. Basically the shifter had 3 modes: Forward was 2wd/4wd, where 4wd was selected by pushing the button, then there was a neutral and all the way back was 4 lo. On those, the CENTER diff lock button was to the left of the steering column.
I don't know if the 01-02 models had a 4-lo UNLOCKED center diff option.
ALL 4th gen V6 4x4s have multi-mode with the center diff lock to the left of the steering column. V8s are full time 4wd and also have the center diff lock. The '09 Trail Edition had a rear locker, I think the button for it is on the console? 4th gen V6's do have an option of being in low range with the center diff unlocked, meaning you can drive in 4 lo on the street if you want to.