I don't believe that the Tech actually tested the fluid level sensor and your test seems to prove that, he simply plugged in his Tech Stream tool and saw it said there was an problem with the fluid level sensor/curcuit but didn't do any further testing as described in the troubleshooting document to determine if it was indeed the sensor or the ECU, and since both Brake warning light and ABS light are the symptoms further testing is needed to determine what really is at fault, BUT as mentioned Toytoa dealers usually just replace the entire master cylinder to cover all the bases and gets the job done, it gets them to the next job faster hince more money.
I'm willing to bet if it was the Tech's vehicle he would do further testing and just replace the part causing the issue since it would be less money out of his pocket, but since it's a customer's the more vehicles he works on the more money in his pocket because most of those Techs if not all work on commision/percentage of job cost, they don't make as much money trouble shooting as they do replacing parts.
If it were my truck I would gamble on the ebay unit you found..IF you can confirm the ECU has the same part number as your's does and they offer at least some kind of return policy if it's defective, I do believe there at least 2 different part numbers for these ECUs depending on the year model and possibly other factors on some models with special features, I think the rest of the master cylinder is tthe same on all year 4th Gen models.
Also if you have the entire assembly you can just use the ECU to put on yours and if it solves the issue your good to go, but there are other parts that sometimes fail on these units that you will have if you need them in the future, such as the electric pump motor, the accumulator, etc., or you could sell these other parts to forum members that may need them.
If the ECU fixes your issue I might even be interested in the rest of the assembly if you don't want to keep it for future parts, since I plan on keeping my T4R forever unless the engine dies and I might even rebuilt it if that happens, but I like to have various parts and components on hand that I know may need repalcing at some point since I do all my own work on my vehicles.
Edit: Forgot to add that yes I do think that the "Control Module" is the "ABS" and "Skid" ECU.