Not sure this has been posted here, but since I kept failing my smog test in CA due to a mismatching E.O. sticker for my 2002 4Runner, I thought I would mention it:
The E.O. sticker for a 2001-2002 4Runner with a super charger IS different than the E.O. sticker for the earlier 3rd gen models.
The correct E.O. for the later 3rd gen models is D-425-15, which must be listed on the sticker, and the part number for the sticker itself is MDC# 00602-89020.
Some posters have said you can print off a document and show it to the shop for approval, I tried and it has never worked, but best of luck. The sticker was $1.09 at my dealership after tax.