I would still highly recommend checking how many milliamps are being pulled from your battery while the car is off before claiming victory here.
The symptoms you're describing are functions controlled by the Body ECU, which is integrated into the back of the driver's side fuse box.
Clicking sound in dash: Flasher relay
Rear wiper: Back Door ECU (controlled by the Body ECU)
Rear lights: Not actually controlled by the Body ECU I think, but the circuit for the rear lights shares a connector (J39) with the constant 12v ECU-B circuit and directly interfaces with the driver's side fuse box.
Key fob: Sends signal to Door Control Receiver, which communicates directly with the Body ECU through 2 signal lines. If your ECU is doing weird things while the car if off it might be ignoring your fob's commands.
The point is, if your Body ECU is receiving any kind of voltage when the car is off, it's going to send out a bunch of commands to make the car do things when it shouldn't. It then gets tricky to diagnose becasue the reality is that these symptoms may not be consistent over time, especially when you're constantly resetting the ECU by disconnecting the battery and those connectors that lead to it. It all depends on what the ECU decides to do while "confused" by the voltage it's receiving when it shouldn't be getting any.
My 4runner is my daily driver so I've had to troubleshoot all this while still relying on it to get around. Just been unplugging the battery every time I park. I'm also seeing the exact same symptoms as you, except my car alarm would randomly go off when the car was off and locked with the batttery still hooked up. I've had all all or some of these symptoms go away for a time, but I could always confirm it wasn't actually fixed because there was still a parasitic draw on the battery. And sure enough, the symptoms always eventually came back. It's been 2 weeks of regular driving since I heard that clicking from the flasher relay and it started up again a couple days ago.
You might be right with thinking it's those connectors by the parking brake pedal (if so, I'm jealous, haha). But if you see a parasitic draw off your battery or those symptoms start coming back after drying out and cleaning those connectors you mentioned, you might want to start considering the Body ECU (ECU-B circuit) or the ignition switch circuit (this is what is technically supposed to provide voltage to all the fuses you're measuring).