Hi loafer,
I just grabbed a look at the wiring scheme for a late model 4Runner (2014) and it looks like you may have popped one of the Main body ECU compu fuses; that's the only common denominator between all of the circuits that you mentioned in your post. You can start by checking these fuses in the driverside Junction/fusebox. (1) DL2 25A (2) ACC 7.5A (3) (4) ECU IG-2, and (5) ECU-B 10A
I think that the MB-ECU just stopped communicating with the other slave ecu's so you lost control of a good amount of your accessories. I checked each fuse to everything that you mentioned but there's no connection between the power windows and the main blower for example, but all of their own ecu's are connected to the MB-ECU. Check those first and let us know what you find. If you can't find a blown fuse there, don't panic... I'll continue to search the electrical plots; too many to post up until I know which one is the culprit.
Cheers