You should let everyone know how it is after a few weeks. I wonder if the connections to this larger alternator will hold up. I say this because I have heard of some trucks in my father's company who had issues with some of the electrical cabling overheating due to not being sized for the larger alternator. (the mechanics assumed no issues would be seen if they installed a larger alternator).
We are talking about bucket trucks, so of course the electrical draw was much higher than a consumer truck. But, if you are powering a sizable system (not sure what you are drawing), you technically could put yourself in a situation of drawing more amperage than your wiring harness can handle..
Just a thought..