There must be a procedure to manually reset it. Like my 94 xj it's a key and headlight off/on sequence. When you add higher performance goodies it's better to relearn from scratch and much quicker. I have awesome results doing this. I think I actually did this in my 2010 runner with a key and e brake sequence after servicing all PCM inputs now that I think back.. you can loan me your techstream though ��
Here's a 2000 FSM: Update your browser to use Google Drive, Docs, Sheets, Sites, Slides, and Forms - Google Drive Help No where in there does it have a procedure for resetting fuel trims or learned engine values. The learned engine values clear when the ECM loses power so either pulling the fuse or disconnecting the battery clears it.