On my 2005 SR5 V6 (single zone) system there are 3 servos.
1. DAMPER FOR BLOWER SERVO (currently being discussed)
2. MODE SERVO
3. DAMPER SERVO (usually called mix servo by this crowd)
To answer your question directly, no. You are experiencing an issue with item 2 or 3 (or likely both). I strongly suspect 2 in your case. See:
EVAPORATOR & HEATER COMPONENTS for 2005 Toyota 4Runner
If you choose to fix this yourself do yourself a favor and clean up 2 and 3 at the same time regardless of findings. By cleanup I mean the disassembly and bending/polishing of the electrical finger contacts. Both mine were defective and now my system works perfect (I had the same symptoms as you). One of the screws on the mode servo is almost impossible to get to. My solution was to drill a hole in the side of the blower motor box (with recirculation door open) and get a screwdriver to it that way. Tape the hole up when done.
IMPORTANT NOTE: Before you disassemble the servos take a sharpie and mark the position of the white arm on the servo body so you can assemble it back in exactly the same position. You're screwed if you don't.