Sorry I don't... only the paper cutout that I did is on post 118 of the whitson's Christmas sale thread.
http://www.toyota-4runner.org/3rd-gen-t4rs/129748-wmw-christmas-full-length-rack-special-8.html
I just used an ABS plastic sheet measuring 24x72" and 1/16th thick. If I do it again, I would like to use 1/8" or even 3/16" to help with rigidity. I could have probably gotten away with about 20x68" in dimentions. I figured a little extra couldn't hurt. It only cost about $25 for the whole sheet from TAP Plastics.
The problem you would run into is that I had my mounting feet an extra 1/4"-1/2" longer to give a little more height. Also, I slid my rack as far back as I could unlike most that have purchased them. If you were to use my exact template, you would end up having to modify it for the differences between your setup and mine.
Example: It would be taller if you slid the rack forward, but slightly shorter than mine with the lower mounting feet. There would be too many variances seeing as the fairing is not just on the rack itself.
If you just made a wrap for the rack itself and didn't drop it down to the roof, It would be way easier to make a template. If I find that I am really not feeling the visual snug to the roof approach I may cut the fairing down to just the rack which would be pretty easy at this point and would make for a universal template.
I hope that explains what you were looking for.