OK, I've searched. Sorry if I missed something. Has anyone special factory ordered a 'Runner and actually gotten what they ordered. One dealer, the closest, says no. One, 140 miles away, says yes with a guaranteed 6 week wait. I'm asking for a combination that can't be built on the Toyota site. An LE with the sliding cargo tray, hence the special order. Blue is definitely not a common color either.
I do not want to burst your bubble, but rather help set your expectations.
I have had two dealers in two different states tell me this, plus my own internet research seems to confirm, no such thing as a special factory order when talking about the T4R. (Not sure about the rest of the models). US Distributors, ( I think there are 3 or 4 of them), order standard models with various options from the factory. They get shipped to a port of call. If there is a model with options that a customer wants, and that particular vehicle is on the boat, the dealer can then put in a request to the distributer to route that vehicle to the dealer. Or, a close vehicle that may be missing some options, may already be at the disturbers holding yard. Those options may be added at either the distributer or even dealer level. But unless those options can be added by the Dist or dealer, that will be as close as you can get to a "Special Order".
For example, if you want a SR5 but with Auto headlights or smart key option. No go. Only LE's come with the wiring, (from the factory) so neither the distributer nor the dealer can add that option. And the factory will not do it on an SR5 platform.
Conversely, if you want a Red SR5, and just have to have leather power seats and none can be found already at a dealer in your area, but a red one with cloths seats is already on a boat destined for your area distributer, the dealer will place the order, the distributer will swap out seats, and there ya go. Your specific model.
Now, after talking to Toyota and if they tell you yes you can, let us know. I am going to order an LE with Trail body parts and KDSS with front and rear lockers! Good luck and be safe.