Hi , I'll try . As far as the ground clearance in Toyotas own literature published you have less ground clearance due to the sway bar bracket design on the rear axle and also the bracket design on the front lower control arm. Also the hoses and frame mounted oil canisters tend to be vulnerable. The system is also heavy for obvious reasons. The reason that Toyota does not offer a lift with KDSS and it is not advised to lift a vehicle with is the same reason it's not advisable to lift a truck with stock shocks. The KDSS cylinders have a predetermined stroke in and out when you lift the vehicle you move that stroke near the top so you have less down travel it's like putting on a lift kit or a long travel kit but leaving the stock shocks. You will hear the KDSS cylinders bottom and top out like a shock would when you reach their limits. And Toyotas design is for the shock to limit down travel not the KDSS cylinders so there's another durability issue. Another problem and the reason that Toyota did not offer it on the TRD pro is heat the increased stroke generates heat which equals fade which equals the sway bars losing their effectiveness in high-speed off Road type desert , The opposite of what you want on the TRD pro. KDSS is a good system and it has its place if left stock it works great and does what it's intended to do , allow a vehicle to have better Street manners and still go off road that's why it's on the Lexus , and not the FJ , it's not primarily designed for off-road it's more a design for a compromise to go on road as the sway bars are much larger.
Note This is only for you asking these questions I have been flamed for this many times. I hope this explanation helps in someway.