Wow, you are bold. I can't advance timing on mine, I see up to 29* of timing advance when under light boost situations under 3k RPM (no knock sensor input) so that'd put me at 34* which I think would mean engine replacement #2. Be careful about those low boost situations, that's where the timing will get you in trouble. You might want to pull timing by 2-5 degrees on every cell under 3K RPM to be safe until you get some more hours and driving situations on it.
I have a spare intake manifold if you want a few photos. I can see a few spots where it can be cleaned up, as well as porting the runners coming out of the supercharger (they are curved but not very long).
My next project will be to port the roof & intake of the supercharger. Here's some good reads if you are interested as well since we also have M62's:
M62 supercharger porting port answers - Page 3 - Saturn ION RedLine Forums
Eaton Superchargers Modification Guide - Cobalt SS Network
You will also like headers. Pricey, but their power starts as low as 1500 RPM's. It's always there. Larger exhaust will see gains mostly on the high end above 4K RPMs.
One more thing, I think you will enjoy this program:
Virtual Dyno. It allows you to take your data logs from your piggyback and import them as dyno graphs. I have found it to be very accurate, I took my dyno run from a couple years ago and adjusted the settings until the log matched the dyno. Since then I have real-time data on how much power I am making. My build thread has a few examples on it like this: